Towards in Silico Rational De Novo Design of Peptides for Inorganic Interfaces
Proteins at inorganic interfaces occur across engineering, science and nature - biosensors, the body’s response to and the design of implants such as artificial heart valves, control of cell deposition in tissue engineering, biomimetic assembly of nanoparticles and carbon-based nanoelectronics, and anti-freeze proteins are just a few examples from many. Despite the clear importance of proteins at inorganic interfaces, elucidation of the structure and behaviour of proteins at such interfaces and the design of associated systems is still dominated by experiment, and trial and error. We are developing computational tools that will complement this experimental effort.
In this presentation, I will outline the overall approach we are seeking to develop for the rational de novo design of systems involving proteins at solid interfaces such as those mentioned above - which exploits in silico evolutionary processes - and then provide details (with examples) of the various elements involved. As part of this, I will present results for the ab initio prediction of protein conformations in the gas and liquid phases and at solid surfaces, and a molecular switching phenomenon we have observed in polyalanine that may be of relevance to nanotechnology and disease processes.